Are you interested in skeletal muscle transcriptomics? This webpage enables you to explore the data in E-MTAB-1788↗, a very large collection of microarray gene expression datasets.
For more background regarding this web application, click the About tab above.Get started by searching for a gene of interest! Save CSV
This webpage allows scientists to explore the data in E-MTAB-1788↗, a comprehensive and curated dataset of gene expression microarray data from human muscle.
Please take note that MuscleAtlasExplorer is under active development. Some functions may not work, and output may change in the future as the web application and underlying data are improved and curated.
With this application, you can:
The MuscleAtlasExplorer web application is made by researchers at Lund University Diabetes Centre in collaboration with SciLifeLab.
|Phenotype||Phenotype ID key||Description||Type|
|Sample ID||Sample_ID||Unique sample ID.||string|
|Sex||Sex||Sex of patient.
male , female
mixed : NA but source dataset has both males and females as described in publication.
|Age category||Age_category||Average age of patient group derived from publication.
NA if exact age is known.
|Age continuous||Age_continuous||Reported age in years.||number|
|BMI group average||BMI_group_average||Average BMI of patient group derived from publication.
NA if exact BMI is known.
|BMI continuous||BMI_continuous||Reported patient BMI in kg/m2.||number|
|Physical capacity group average||Physical_capacity_group_average||Average VO2max of patient group derived from publication in mL/kg/min.||factor|
|Physical capacity continuous||Physical_capacity_continuous||VO2max of patient in mL/kg/min.||number|
|Diabetes status||Diabetes_status||Diabetes status.
NGT: Normal glucose tolerance.
IGT: Impaired glucose tolerance.
T2D: Type 2 diabetes.
IGT or T2D: Either impaired glucose tolerance or type 2 diabetes.
|Diabetes family history||Diabetes_family_history||Family history of diabetes.||factor|
|Supercontrol||Supercontrol||A supercontrol is defined as a sample from a patient with no reported diseases, BMI below 30 and no severe interventions.||factor|
|Other disease||Other_disease||Reported diseases apart from diabetes status.||factor|
|Study intervention||Study_intervention||Intervention in the study which the sample originates from.||factor|
|Muscle type||Muscle_type||The sampled muscle coded as Latin names.||factor|
|Microarray platform||Microarray_platform||Microarray platform.||factor|
|Study ID||Study_ID||Study ID.||factor|
We hope that the Muscle Atlas Explorer web application aids your research.
If data from this web application becomes part of one of your articles, please cite the article that accompanies this webpage:
[Articles to cite - TBA]Alternatively, citation information can be imported directly to Zotero and EndNote using their respective browser extensions.